NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210390_10001645

Scaffold Ga0210390_10001645


Overview

Basic Information
Taxon OID3300021474 Open in IMG/M
Scaffold IDGa0210390_10001645 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20998
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008143Metagenome / Metatranscriptome338Y
F019446Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0210390_1000164522F008143GAGGMKSAGRIHRTRLAASKVHRHLVKEARRTVQKLGWQVPEDEMSPTLVGAMPLPFPVPDSFETAFGYKGNLRFVQFGYTAGSPQFGYSDGGDDLPSDGRLWSWFLHHPAVAPYLPESRYPTLYGKFPSGAERPPLEQLMGRGAELPTCHCLLLDRRDRRTYVSERDQAMILFALMEPDDGDAHNVFVDGMLMSPGSEDYKVAPPPGVLDEFRRFMDSRVQAFEGA
Ga0210390_1000164523F019446GAGGVLGKERSPNWSRSRSNERQLDLRKYGTTVTDAENQFLENMPDEIKEVLRWHADAQSRGRASQSIADFTGRFLGGMYEDGAVLPTNLSASAPEVLALVLLQHRTSPRSTGAWLNLGFALRRVALYRTQDPEETNRARLQSAVQAFDRALELDADNNGKNIRAWTGMSLAYHMLDMYEKELECCARALESDRSDPKLWLLYSFALKSAGREDEALSTMNDAYEAYIRAGKPNELREVFADVQSTTQRPCRQRMAQ
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