| Basic Information | |
|---|---|
| Taxon OID | 3300021474 Open in IMG/M |
| Scaffold ID | Ga0210390_10000007 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 270308 |
| Total Scaffold Genes | 260 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 193 (74.23%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000249 | Metagenome / Metatranscriptome | 1459 | Y |
| F001772 | Metagenome / Metatranscriptome | 637 | Y |
| F004015 | Metagenome / Metatranscriptome | 457 | Y |
| F006150 | Metagenome / Metatranscriptome | 380 | Y |
| F042509 | Metagenome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210390_10000007149 | F006150 | GAG | MFSGTNPSRSWCAAAVGIVCLMLALCPRLTGAAELTIEELKQRVANATLADRPPLCIRICERQLDVADRFYVAGDSEKAGSALTDVVAFAELARDYAIQTHKHEKPSEIAIRKIARKLFDLKHTVSHDDQQQVQNAVDRLERVRDDLLFAMFPKGGKK |
| Ga0210390_10000007183 | F001772 | AGG | MRNKILFIAGGALLAISGYLWGSRNATVAYAGGQTQPDYSTMPAHGSVPKSYGRVAAVIADQIGTGVIFEDNDGTIRFVSMTGMKEGELARYDQTPTHGGIPKSYGHLVGAVVDPKGTGLVFEDSAGTIRFVTIAGKNEAELTRN |
| Ga0210390_1000000721 | F000249 | GGAGG | MKKFLLIFAIPLLFSVLASAQTTPVSTLPSNNDDPQPRMFFPRDMFWGWAEFDLAPPHNEIDPGICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGQTQLRRFMVFGAPSFLFGKTIPQTLYTWSPDAIGIEHSWGVGIYIDKGFEFRITQHFLFDRLGARDTNLGAADQGNNGPWGRYMTVGVRKYFGTRRW |
| Ga0210390_1000000733 | F004015 | GGTGG | VLLERLSSHHTDVYNILWAVVFGFATLNILSLAVRRSEPNRRGLSFGELMAVMVVLLSIFLLGAELLNFIHIFPIKIQR |
| Ga0210390_1000000797 | F042509 | N/A | MALVLLPFSRPAAAKSICGGCEAAIVGVAVGVGTAVGVGIYLIHRGHTSLTGCVRQTDNGLSLTAKDGNSYELVNPSSEVRAGERLSLRGHKIKGTSGRAFQVDHVGRDYGACAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |