NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182009_10137274

Scaffold Ga0182009_10137274


Overview

Basic Information
Taxon OID3300021445 Open in IMG/M
Scaffold IDGa0182009_10137274 Open in IMG/M
Source Dataset NameBulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1151
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1613Long. (o)-96.6752Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001079Metagenome / Metatranscriptome785Y
F007262Metagenome / Metatranscriptome354Y
F019580Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0182009_101372741F019580AGGAGGVWVKHLSSLQFLTYVAFFAVVVAAICRFVPGKAAPVREEPYPDDELYAHDRKTAKYFVGGGLFLVLGSLHTAVKNLPWIAEYLARTGFAGHLVRDLSNTHVTIVGGGTLLATGLCWLALPRIVGRPLASEGLAQCAFWFTALGLAVFYVALIANGIAMGSLM
Ga0182009_101372742F000280AGAAGGMADEREQRPARPLVGYRDVGEDVRHGRKSEIRAWVILAGLMLIYLGWTLVVYFLEPGLR
Ga0182009_101372743F001079AGAAGMAEQAAVPSALPYVAWASATSAEIPADQWETVYASMQALKAHVQEYPGCQKLEAFVQLGAGGAVRVDCYTIWDTPEQLEAFLERGYTFERMLKGVANIDAQPARIVEKVF
Ga0182009_101372744F007262N/APIDTFGGYTTELAGPATFFFLALTVLLVGWAVVMIIGHLVWGQKF
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