NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182009_10017163

Scaffold Ga0182009_10017163


Overview

Basic Information
Taxon OID3300021445 Open in IMG/M
Scaffold IDGa0182009_10017163 Open in IMG/M
Source Dataset NameBulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2668
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1613Long. (o)-96.6752Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030072Metagenome / Metatranscriptome186Y
F069981Metagenome123Y
F079767Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0182009_100171632F079767N/AMTDPRPPLPTSSSLRPALGLLAGLGLTVLIVFFGVTISTLGALRGVDPKSYVAPAWSYPTHMLISFFGAMAGGFATARITTGHSLFTTLVLALILLMSALAPVLRHAPSGPGQPAWYALSLVIASPLGALLGGILERRRSRAPATLSA
Ga0182009_100171633F069981N/AMRRLAIPALLVVMLPLCAGAQAAEEDSTHYLNISPAVGFHYGVPLKLSVAAGGLFDFRGRYDDGIIAMAEMGQGGAEVSMGYFRMMRFGQGYDVRLAGLRTSNEPHNAAPGTTYLGAEAHVMFLLGIGGRVGWFRRASSYSGANTYDNVGSFRVSIGL
Ga0182009_100171634F030072N/AMRGVDWPLAITLAVVFVVMSVFRWRYFRSVARRRAQRRERDETSV
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