NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206685_10080748

Scaffold Ga0206685_10080748


Overview

Basic Information
Taxon OID3300021442 Open in IMG/M
Scaffold IDGa0206685_10080748 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001334Metagenome / Metatranscriptome720Y
F044553Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0206685_100807481F044553GAGGMPDQESIHNLQTEIQTLKIKDEFRTKELDALMKKLSDTSIKLNALSENIGRLLAGQDLHKTSDNEVRDELKILH
Ga0206685_100807482F001334N/AMMKFKEYLQLNADDSIEQVMDGEWILKSRTTWKATDDEDNKLEIHNDGHDPELNGESWSVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARSRIYPQSSN

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