NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1004215

Scaffold Ga0213920_1004215


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1004215 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5714
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001725Metagenome / Metatranscriptome645Y
F090066Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0213920_10042154F001725N/AMASVSKGVTCLYGVAGTVTNLYVQSYSISASFNNEDTVQDESGLTKTWRADDRKTEITVEGIVKASSVPALGASFSFTVNAETAYPSGTASASFAGWVTKVDEKGGNKEFVKVSVTAVDYESVAP
Ga0213920_10042155F001055N/AMGTKSIRHIVEQVLKTYLSTESTLSGVSLYTGDSADIMTLPKLVILCESARTPNDLPEGLGNYSCSVRMTLFSNTDDTTLTDHRARCAGLAGAMSVDSLTAIKAAFTASGDATCYDVTIQNEDEGVDERSWATVFSYDILVVLPA
Ga0213920_10042157F090066N/AMSIYSEFLPDAKEMLADFGVAGSIPSGPTFLCLISDPVQTQVLEAGGYCDRTQFSVKVTATTSAWTASDGRVGASAALLSGGNPIASLGIGKKITAGGKTVRITSQTYKPGSAWIILVVIDDNQ

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