NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1001921

Scaffold Ga0213920_1001921


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1001921 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10639
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009401Metagenome / Metatranscriptome318Y
F023587Metagenome209Y
F025013Metagenome / Metatranscriptome203Y
F048985Metagenome / Metatranscriptome147Y
F077034Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100192113F048985AGGGGGMPYTAQVSVGTTATILLAANRADQVVSLHSSSGTIYIGDANVTSTTGYKMDNGDKLTVQLSDHETLYGITGAGTATMQVYATIN
Ga0213920_100192115F025013GGAGMENVSFIEVAHPVTGELIKNAIIDRGNGEFTSMLKSTYDEMIANEAASL
Ga0213920_100192120F009401AGGMAKIKVTRVDGQVGEYPLTPLVQYGFEIYAKKGFYAAFNEDMKQSDIFWLAWECIRRSGETVPMFGEKFIETLVKVEVVEDDPLD
Ga0213920_10019216F077034N/AMATTEGKGIKMGEMVILDNGTATVMGGEFEEPQDIVIYCDLCNEPLAITPTALDEVYLRCLKCHTINAKPTPQE
Ga0213920_10019218F023587AGCAGGVKATEALINAIDIMQDRGKVYGHPKINQGRISARLSNLFDFPITDSQAALAMVEVKLSRIQESPSHTDSYIDAIAYLAIAVQLQTEEDELYV

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