Scaffold Ga0213920

Basic Information
Taxon OID	3300021438 Open in IMG/M
Scaffold ID	Ga0213920_1001338 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021438 Open in IMG/M

Scaffold ID

Ga0213920_1001338 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13823
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13823

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (82.61%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F015330	Metagenome / Metatranscriptome	255	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100133810	F001059	AGGA	MATFDIEALKADLPTAKELAQFVYDKTQIALDLVGKPKEEQYLVAKNALEGKKIPQDFLTNENPYVDRKELIPVDELKEVPPRGNDLPPESSRIHFFGATNMPHPLDPQSDRKVQINFWKYDNGMITYQVAGPVEQLAVGSRINKFGQTQPEKYTWIDPRTEEIVLRRQDGSFTEKGRGIYSFCIGEKGAGIWSLIDKDVISFTEKNIANPWA
Ga0213920_100133814	F015330	AGGA	MDTVKETKKAIELATGKRSPKQKSVVNNVTEYGALFNRLNAERQEKGLPPLKTAMEVLIDAMQSDELDMKDKARIADKLAPFESSRAPIISIEHVQNVQKDEEEDAEQALENFLESLKKV
Ga0213920_10013382	F005087	AGGA	MAQFIQSANTLVSRVASWVGAIAYSTNVNASSYTSSSGVIATASSLVGVVSVGDFIGYNPTYPFTVVTAVGSSSITVNDPDLIWNGASFPVAILKLPTQSIIEIQNSVQLAELKMRTVELPALRSNPYDPSSPSCVTTDSQGMAPIPADMNWPILFFQQTPNSDTPPGSAAAAMGPWIIYDRVGDREIIRRRMIDQLYVKPFGVPRVIRASFSEVGPNYIFTPNPGASVQILAYYQKTFPFLFSPTSDSLNPIVQNNAVLATFPEGYLYGTLEAYYDKNKNITEAEKWRARFDEAYGLIEDQNFKDKWRGGDQHLTSEFQPRDYRYSFR
Ga0213920_10013383	F000857	AGGAG	MEKYETDQVTEDYYLKGNLEAGIDGVFRQNDKLFNEVKSGTWSQTFKTQNLDYKVGAVDGERYVQYTQHNVEAIKADCKQKREFYAIHGTDNPFFAGTFHAMELPKCFAHEISSKWFNNRPWELIKKDKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPSIPTR
Ga0213920_10013387	F004695	AGGA	MLDKQNIVIDNLTSPTGHRGIVEQVAHEAYVKMVDYLRLTQSKNTYNRFTDYHYLQIPVANSTEPVRGIDYIAPIVTPGIDYATAVITKCLMPDGQVNFEFNRLSEMDAVASKQSTDMVKYFINDKNDAYAIIRDWAQDALLHKNGIVMVMPIRETITMYKEVEGTRDQLRAFEIQAADSGLTSKRQNMRRVDVNLQGAMAEMMNPPQEEEQGEGPESQGEELNEALKNNTIYKAKYKLTGYSTNIKIKHVAQHYFVCNPTVPKIADQDFIGFYDPMTIHEAKVLYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTVWLRKDIDGDGEEEIVELCYSGSYVLYAKEVDFIPLANMNPKPLVGNFFGYSLGERLVPMQEYATSVRRAELAFALQASTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPNKHVWEPQALQGNLGYVQSSMERFDSEKMAMIGMTSPGDTLNPEVMKDGNSGFKLQTAMGPNQLIQDEMVKNCAIGLKDVVYLVWKTMIQYSDDYNIQQLAHACSENAGGFLDAMAVENYQFIDRKMISLDLALGFMSEENRLTRQQLITAAQQQFGQAMMMVPPQLPEMFAKLRLPYEDTLRSLGVKHIDAYLPTLEEWAKLGQFKSQQPPSPQDEEMKAKTQAQLAKAQETIANTAFIKKKTDDIDTDNMFEALAASRDKLRAVQVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213920_1001338

Overview

Ecosystem & Geography

Associated Families

Sequences