NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1001120

Scaffold Ga0213920_1001120


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1001120 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16008
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002934Metagenome / Metatranscriptome519Y
F004639Metagenome / Metatranscriptome429Y
F074577Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100112016F002934AGGCGGMNMKNPYIMSVGAFLAVWGTTSNFALDYRAILGSIVAGVFGYATPKK
Ga0213920_100112018F074577N/AMARKRPVIDLDTYSALDAYAIAMNEWYKSLRRAGFSETHAFWILADRDAFPDWLIPNLPNRIDNIPYEDDDED
Ga0213920_100112023F004639GGAMGHITFLNQDGEWESFPNEEQEANLRENAKLLEELGYRLICQLCNKFPNRTQIRSRYLKNEWTCEECGTINSAGKA
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