NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000324

Scaffold Ga0210394_10000324


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000324 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109502
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (68.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000279Metagenome / Metatranscriptome1383Y
F001209Metagenome / Metatranscriptome747Y
F002979Metagenome / Metatranscriptome516Y
F051364Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_100003241F051364AGGAGMKKVSTVAAKPSKKISQQKLTVGLDLGDRNSWYCVLDE
Ga0210394_1000032458F000279AGGMTQNNDHPGMMEEVVLPEHLLPLGSVLGQGVTAMDLCMVLAKIFQVQYNEVALLRLEGGLLRFMFPEHLRTTGAIPLSSKAVAAHTALSKKAEIFNNFARVKHASIFETIKADTNGSNEPPAPSPIQKLMSVPIMGQDSVVVGVIQISRKGLDPKYAKDFSREDLHDLELAAGLLATAPALLAN
Ga0210394_1000032479F002979N/AVKPQRKPEKSTKDKPALRMFLAPCSCGTTFAVAENYDHQGTAWGRYLVCPGCGKRHDPKNRLLQMGFHAEGYWKVDEC
Ga0210394_100003248F001209AGGAMSSPTAISSATTDVLVRNEGTVFLFCPLTSLGKEWIDEHVQSEALWFGHALVVEHRYAWGLAQGMKDAGLVLA
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