NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000305

Scaffold Ga0210394_10000305


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000305 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112876
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)89 (79.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000151Metagenome / Metatranscriptome1897Y
F003117Metagenome / Metatranscriptome506Y
F003314Metagenome / Metatranscriptome494Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000030514F000151GGAGGMEDRHNGSGMANRGFLASGDPHVQQVVKSAHEELRSLMRQRAEIMKRICNVKQTIVGLANLFGDDLLSEDLLELVDRRTSGRQPGFTKACRMALMEAGRPLGAREVCEQIERRTPPLLSRHKDPLASVTTVLNRLVEYGEARAVVRENGRRAWQWISDPVSSGFVATPASEHPAA
Ga0210394_1000030530F003314N/AMTTKTIPEYLEDERQKDRDTQLLRQEEAARIQPLNHGHHRTAKQPRLKLPSSVKAVPKTRKPSAAARKKPRIARKTATKARKVA
Ga0210394_1000030550F003117N/AMNLKHYLEEILLFDSLLPPCHDVAMPDRRLQIARFIGSTPSVAYCDVCRLAFRTRQEFLTDFDKARQQLQADFDKHECKPEESAVNDALSHIK
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