| Basic Information | |
|---|---|
| Taxon OID | 3300021420 Open in IMG/M |
| Scaffold ID | Ga0210394_10000006 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 530834 |
| Total Scaffold Genes | 512 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 368 (71.88%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000065 | Metagenome / Metatranscriptome | 2788 | Y |
| F000272 | Metagenome / Metatranscriptome | 1408 | Y |
| F000410 | Metagenome / Metatranscriptome | 1170 | Y |
| F000893 | Metagenome / Metatranscriptome | 846 | Y |
| F001474 | Metagenome / Metatranscriptome | 688 | Y |
| F001517 | Metagenome / Metatranscriptome | 679 | Y |
| F002696 | Metagenome / Metatranscriptome | 536 | Y |
| F005961 | Metagenome / Metatranscriptome | 385 | Y |
| F021843 | Metagenome / Metatranscriptome | 217 | Y |
| F042443 | Metagenome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210394_10000006132 | F002696 | N/A | MPLLSEEARENETVQALVQLLRTRSYEEIRQRMYDNPPGSAWWSACKTELDIRNGEQMAAALSATSRVLERLRASTEHFEQLADTLYHTTSEIAAQMRSAKDASRRLEIAVYVTIGITLVQLFNLVFEVFRKR |
| Ga0210394_10000006168 | F042443 | GGGGG | MNIFALGPVVLLLVAYVLVKVLPRLLVREVSRAVLGEVGKHAMAKVPEQIQLARVASPQWKDEATVQQQAAPLVRAGFNDLGTYSVDKMPGVLLRVLFQPQTYVSVQVCEHPKAGGWIEFATRYADGSSDFLTTLPDQGIAQPPFVRTNRAARGTPTDGLYQQHLKQRQSSGIKPVSPSEVIREFEVAYMRYMIWKNNKGLTPEEVAQATLKWVKAKEQAAGQS |
| Ga0210394_10000006208 | F021843 | N/A | MKKWKWDRIISVATLASSLIAIVLVLKKPHPVAPPMPAAVAAAKAESFQEKVEQFEQPKQPGQAPSEVHLSSDEISAALAQAAGMIPAAQPQPQQPTSSSSLPSVPPTSADAAFGPGQPEVKDYQVNFDGDVARGQFVTQIGGKDVYVTLAGHLGSKDGYATFDPTEFKVGDLSIPVSLVNDALQKRLTEQRDRLKLPDNVDGIKVENGELVMTGK |
| Ga0210394_10000006242 | F001517 | GGAG | MTPKEQSPVLISSADQKLALSSLEHDQLVHAKKHFIPRRHLKGPELFVLWALRIYLLFMMAVVGYQVWIAAH |
| Ga0210394_1000000628 | F000893 | GGA | MLSIHSKIDRTQRLLRMLEEDAPLLAVRVAPLTEERQRSAKDYAADLRARTRAELEKLIEQVSLWDSNDRTPQAAD |
| Ga0210394_10000006435 | F000272 | AGGAG | MSQTVLERTAERIAESAHQASRATSAVADAIEDGAGAVRRVAKQGGDAAEEFLNETTQRIQEHLVLTIAMTFAAGFTAGTLIGWMKRR |
| Ga0210394_10000006438 | F000065 | AGGAG | MHLCNVDPPDRKGGALAERGSEHMTHISNHLIPKLRKAAQPPLPYPGATADADRAKKPSLAELPATDQELNPGDRVEGLGDFGKPTGEFGTVERANEDDAVVKWDDDGRTRLHQPSLKKV |
| Ga0210394_10000006454 | F005961 | GGAGG | MRMLLYAGLLLMALGIASLVVPIPHSENEGIKIGDTNIGVQTSHNERVSPIVSAVLIAGGIALAIAGARTGRSRS |
| Ga0210394_10000006456 | F000410 | GGA | MARQLIWIERQRFRGFGCSECAWVFISSSAPSGKSFDEMMRNFELQRDQEFTLHVCADHPNRQKQGNKNTD |
| Ga0210394_100000065 | F001474 | AGGA | VNRLYAGLAAFVALGVLAWMTISDPRIRLATLAILVMFAVKTWVRRKDLVHGKGNDFEQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |