NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193694_1000005

Scaffold Ga0193694_1000005


Overview

Basic Information
Taxon OID3300021415 Open in IMG/M
Scaffold IDGa0193694_1000005 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)238039
Total Scaffold Genes209 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (21.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9137Long. (o)-106.8949Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008428Metagenome / Metatranscriptome333Y
F010579Metagenome302Y
F073705Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0193694_100000514F010579N/AMKHYKIIKIFLLIVVNTIVILEGTHAEHMPIVKSKPVEGSEKDVFPDLLFFASYLYQ
Ga0193694_1000005185F073705N/AMKTPIRDLAFAAFSLLIIVIVLCSFAPAKRNSVANGSGMAGSISFSFNAVEQKDGVVIGSIQYGEETYSINGASWFGKSAILFTDDGHAFFVSDNGKGSVNDWISDPITAEKSPYISTSDFFGIHGVSTGNIQVKE
Ga0193694_1000005206F008428N/AMFSSFMKTSDPKTEMVCGIWKGYFGTESETNSITIKINPQNKAEIFCNFKEACLNTKGTYKLIGDSAIVISCILTEKNSSEVVLYGNLNRTTSFIDGQWDGEGKQGGCFYLQKQSAQTNL
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