NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210387_10233357

Scaffold Ga0210387_10233357


Overview

Basic Information
Taxon OID3300021405 Open in IMG/M
Scaffold IDGa0210387_10233357 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1605
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004826Metagenome / Metatranscriptome422Y
F010409Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
Ga0210387_102333571F010409AGGAGMSENLNLLRRNHCRPGSFTGKRTDHLFPLEEECEEGKTLLATAPKPLFDLQEFDPHGLEQTYREEVTGTELPVFAVFDLEGSHQLTFEITIDSLPAADQSNRLPAYLPFQLTQAFVKKINDRRMKSEGVLARLAVLLGTFPVLSLLLSHSIRM
Ga0210387_102333572F004826GAGMNHSTQGNDLMRRAYSFLFAFFLITLSTLHAERIDHRNFAIDTCFPSQNAIQLAEGRARAYWAKHASRYGPEPRFLAVQTSKVFPGEVQDLWPKLINSETTASFFSHGLKDNTYSNLQLLGVMIFDTRTGRFVSNQGYISVDTPPRGGVARFGPYIARYIGWG
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