NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210387_10034835

Scaffold Ga0210387_10034835


Overview

Basic Information
Taxon OID3300021405 Open in IMG/M
Scaffold IDGa0210387_10034835 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3988
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000549Metagenome / Metatranscriptome1036Y
F001273Metagenome / Metatranscriptome733Y
F053411Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0210387_100348351F001273AGGAGMRIDLYTKTILTIIALLLAVIVVKPLFQPQPALAEGKYAGVQFSYSGGNHAFFDARSGDVWEYGEDGHFRQHHKVREFGKDHDH
Ga0210387_100348352F000549GAGGMRPQPQEKVGRADRIEGSIVLFRSAARSQVKPQRPLSRGEPWWNMVFGVPLFLRTLLRLVFVCPHRHKGPPVTLRESIPSSLSGSRPVSGRGSYITCLDCGQKFAYDHRIGHLVDFWGVHDKEALAGVRRGLEGLFSFLRGLAGRGGKLNRRTQMSQRVKSVHRLGILTKGQ
Ga0210387_100348355F053411GGAGMKMLATAFCVLGGGVLFSTAAQGTSTTPERPKFKIEIRATGEKGQGPSFAVTNLNAKTVTACVFEQSYPSQSARKTTTVWDALGQGDTPIEPGQTVLRPLNPVIGNALPDKVEVIAGVWADGESFGPPKWASNIFNYRALRASEDEDAAAILQRGLDQNWNRDQYQQAFSDKPDSGPVYIVRTALTATQQTGQTPQEFSHTMQFLLKSFKQQADKLHKSIPQ
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Institute for Fundamental Biomedical Research
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