NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210389_10660578

Scaffold Ga0210389_10660578


Overview

Basic Information
Taxon OID3300021404 Open in IMG/M
Scaffold IDGa0210389_10660578 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)820
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016418Metagenome / Metatranscriptome247Y
F017331Metagenome241Y
F096853Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0210389_106605781F016418N/ASYRGYDLEQKTLMVGWQITITRDGKFVRNGTVTKDLSAAMNEAEKFIDRTLAESDGAALGARS
Ga0210389_106605782F096853GAGGMFSIGQIFEGVIGGIPRSAKVIAIVDGGRIGWLEFRDTKGPPFELDVTRASVWKLVQGVR
Ga0210389_106605783F017331AGGAMMHRMPNAGDLTSAEFASLTRVSRGFICATIPKTHQARLVELGLIQAMMGGLIITPMGRMVARA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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