NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210389_10003767

Scaffold Ga0210389_10003767


Overview

Basic Information
Taxon OID3300021404 Open in IMG/M
Scaffold IDGa0210389_10003767 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11831
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F005822Metagenome / Metatranscriptome389Y
F057062Metagenome / Metatranscriptome136Y
F064903Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0210389_100037672F057062N/AMAMLEREEIRSLVSDSAGLPSAADYACTGLQPDTRLQEELFSDVISSVCYWSTVILLALAGAGLLYWRLRHPGSAAAPVADPFGISTPPWMMLSLPPIGVAASLSHAAWCAARGRRAWRMLMTAASLIAVMCATTVFETYLTAL
Ga0210389_100037673F001473GAGMETRYQTVGEMYERLQLMIRQRGDTGFRLAVRDAVLQPRNPFEPANKRRPKPALAIVISVILALAFVFSYFSFHHGA
Ga0210389_100037677F005822AGGAMSVNGTETIAESKGPQPPPANGRATRVAADSKATPARGMTTRHRRDRQDSEKSAEERFFLATGSRNGELPALGRECTSEADAIINAFREQVNFYRVSEFQTRADVGRSGEPILRKDCLKKNNPAS
Ga0210389_100037678F064903GAGGMRLFPSSYDRADVLMSAGCSTFVSAALILVIPRIGVLLLEMLFGLFFIGCALMARARVRRQALGKEGHKKSSAAQAKWFDRYDVLMILAVIAVQTATGGLLRKAGWSEGTVSILPLIMFAAGILLKPRVVEFVERRRKTHPADADCRSTAAQPENLDPTDRALGPE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.