NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10147854

Scaffold Ga0213868_10147854


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10147854 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1457
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045787Metagenome / Metatranscriptome152N
F048349Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0213868_101478542F045787AGGAGMQKLLIKLLDMMGITAGDAVVIESVDYFLWKIDLPLGKISADTYEGVHWGDSKILDTDAWLTFTVGNLYADNEFSFGEGIVNINYADDNEGLAYTGELEDVITARIKDLYNLSADGSEQGMQGDDYISLDLWMDGLCDNGEDEFTPEQMDADFDDSESENYLKQFCRHSAVLAS
Ga0213868_101478543F048349GGAGMQKKLISNREMFRQLLARDILAILEQFNGGACMRLIDIKAQLQGMSACRHYMNLHTSNGHGYLSFNDRFFRAIQSINDSGYGISIRKHTNGQLWAFSTNTLKQDNWQNFLAECFTKWTADYNMNAGYKLNTQLDEAEA
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