NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10048063

Scaffold Ga0213868_10048063


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10048063 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2988
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002502Metagenome / Metatranscriptome553Y
F029774Metagenome / Metatranscriptome187Y
F099390Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0213868_100480633F099390N/AMKDGTYVVRLDDEGIPMLANQINMSDGYWVSDDSGVSVHGELESNAVLDALSLMDIKDGEIVGVWQNKEVSYIDRSYHFRNKDTALTVGEAFKQIAIWDCANSKTLDIRYS
Ga0213868_100480634F002502AGGAMNAPTIGEAFTTQSSGVTGTVQEVIKNSTGSLRVRLDVNGQDRWTTVK
Ga0213868_100480635F029774GAGMARSISVKVPTAMLIQQIEERIAQIDAEVAEYPAKREAFDKAEEAYKAQVANFVAAYLGENLDKIGFSYEDIIRINTGFVGFRSNGGKVELTFDTDAIVGFPVRPEAPEKPNQREHFGRDYSTRKELLEKNLRILKMTSQEEVSASTYGAIMEII
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