NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10020222

Scaffold Ga0213868_10020222


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10020222 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5208
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071256Metagenome122N
F103552Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213868_1002022212F103552N/AMETINDFLGRLDKMAVVGLDHKDLLLERDGNSFRLEHRLQLSRHSLTRIDCVLYLVGIAEDGSRHTIRVWGVEELEPFTRWYWDKYNKASNLSYRQDEVNKDALLDVFLAD
Ga0213868_1002022213F071256AGGALIVYCTRIQTKGNPHKSNTAVKKQTTNKVATTAKVAKEVKSNAQSVSAPTQSAEVKATLKALRATAPIVKLNESIKKGSVDMFHKSLKLGTLLSARLEAFNAPEFKAFIKADGRKVKEERERLWVAIEMSKSYFHRHATAGSFLIGDADSGAEFVLYREAMLALDERCALDVDSYNAWMKAEKPAAAVPVKEEAVAEVEGEGEGDEFTDEELAGVAAQFVVSTDAVSGSIHFNDDGSIKAVNGNQQALIAMFEKVADSLGIVFHSIEA
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