NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10015818

Scaffold Ga0213868_10015818


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10015818 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6066
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
Ga0213868_1001581811F008747AGGAVTAVGVPLMAPVDESKASPAGRDGDTDHEVIVPPLEVGVAVVIAVPFVNVNEL
Ga0213868_1001581813F008747N/AVAEEETAVGVPLIAPVEESKDKPAGREGETDHEVIVPPLTVGVTVVIAVPLVNVNEFGL
Ga0213868_1001581815F008747AGGVTAVGVPLIAPVDESNDKPAGREGETDHEVIVPPFAVGVAVVMVVPLVKENEL
Ga0213868_1001581816F008747N/AVEESKDKPAGRDGETDQEVIVPPLTVGVTVVIAVPLVSVNELGL
Ga0213868_100158187F008747N/AMAEEVTAVGVPLMAPVEESIARPAGREGETAQDVGVPPLTVGVTVVIADPFVSVYEFGL
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