NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10003506

Scaffold Ga0213868_10003506


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10003506 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14606
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045773Metagenome / Metatranscriptome152Y
F053312Metagenome / Metatranscriptome141N
F072378Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0213868_1000350614F045773AGGMSNVINFPSNGIIATKCFCECGNSLEYWVGNDGNAYGICSHCNIGMPTEIEVVEKGDEE
Ga0213868_100035066F072378AGGMDSLNLTKSLEDCFDWELNDEIIRFDAIIESLMTTDVQRHKIREELIDWQDGVANMVDELSELEPYEGFREFAAMAEDIFGTEQ
Ga0213868_100035069F053312GGGGGMSYKVLNDAVGLIRDETPMWEGSYQELSDKTKDGLICLWLITHPTWMDDVFPHTVSDKPLLALEAIYSEDATSRMAAAMFRDAADRNAKDVDNDAYLSEALDDFEDILDTPDFLEEIRHQLYMYLEPSMEELVMDSYQDLIYLDRLVMGSH
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