NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10002534

Scaffold Ga0213868_10002534


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10002534 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17465
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (16.28%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035780Metagenome / Metatranscriptome171Y
F040126Metagenome / Metatranscriptome162N
F045679Metagenome / Metatranscriptome152Y
F059863Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0213868_1000253426F045679N/AMSKVKTITISGKVSEYDVKYTKAYVSKIISSQSDLYQELIPESLPYNAVKEIYVDGILEAELIGSNLLYVQKRPKHDPYVDRHEPPTAGMGRYKGHTVPEEFDESHALDMVLNDMVENMTDEEIREMYLDETTEETTNKSIYLQSVTSPPPYWVTDTTAGDVEINYTS
Ga0213868_1000253432F035780AGGMENTVEVKGKDEVWWATTNEYDLEVNGENLSVRVAENPKSTEFFMWNESTGWEEADTDEGIMAIIYEAWSNGELD
Ga0213868_1000253433F059863N/AMKDYKFKVGDKVTWIKPMAAVPHPEGKTDRNGEVLPVFRDKQEKGRVISYNYHGYSIRPDWAEQYKNAMCGERYYDVTISDNDKSLKAI
Ga0213868_100025348F040126N/AMAKVPLFEDFVPVGFAPNSAAQFSLGGGYKETGYNMDAIVGPVEQCSNHVAEQANSYESNDNPEHTAEAYIKEAKKHINDKIDEACENYSMSESTLNEGTDISSWNQAGIKGDANAQITTFVGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV
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