NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10001801

Scaffold Ga0213868_10001801


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10001801 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20678
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002033Metagenome / Metatranscriptome601Y
F004631Metagenome / Metatranscriptome430Y

Sequences

Protein IDFamilyRBSSequence
Ga0213868_1000180118F002033N/AMNKFNTFLANHGTKIILALLVLTYFKSCGIDSELTKVKKELRATEAEIDTLTSQIVNEERMIFLIKTVPDWKTLRIEEISDKERISINALEEKED
Ga0213868_1000180136F004631N/AMKYVKKYNDYINEVNRPGKPYHGSKILVFDLDDTLVISSAKIKVCNKKTGECYSLTPEEFNTYEKGEHEELNFDEFKSLEIMKAGKLIDYYLKIFKEAYRSKLAVGIVTARDDRKMIYKWLREHVGFRIDNDLIFAVNDPVHKFKGSISDRKKAAFKELIEMGYSDLQFYDDDDANLRLV
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