NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213868_10000152

Scaffold Ga0213868_10000152


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10000152 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61479
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (87.30%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007589Metagenome / Metatranscriptome348Y
F043827Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0213868_100001523F007589GAGMKSFKAYITEAKIKWKKVPDGYSSGTKKAFKHITSDGKFEIRLSGMDSMKFNKDGSQKLLATVFDKSGDTPRYPITGYKNVATAKAEVERWIKDHEEV
Ga0213868_100001526F043827GGAMKKKESLGFFDTQATYDDWKKIGSFSKLQVWVDDSMDEMLWIEVVDTSVVHGRSPQRVKRVLEIQLTKTQFKAYHVDMTRLDHKYAGRGIAAKAYRYIIKKLGLTLQAGCCQSKGGRKVWFDLAQRSDLNVFAKTKYGQPSTVGIDCEEREVWLPKREIYDGDKAIYVFAAAA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.