Scaffold Ga0213876_10003601

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213876_10003601

Scaffold Ga0213876_10003601

Overview

Basic Information
Taxon OID	3300021384 Open in IMG/M
Scaffold ID	Ga0213876_10003601 Open in IMG/M
Source Dataset Name	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8812
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.2822	Long. (^o)	-43.5936	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018372	Metagenome / Metatranscriptome	235	Y
F029381	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213876_100036012	F029381	N/A	MPEDAHLPPPALKKIDLTIARLRLLLADIAAREAALEDQRRTCREQHHKLVTFSIYGDAHLDTVLSMLGDVQERLGAMDATAQSLAAIRKRAENELESLQLTKGIEEAKILLQQLQAQQAEPSGALSAAEIQAEIARLQSLINEASERAAKSIGRR
Ga0213876_100036019	F018372	N/A	MPMTASRKGTKTAASFDFTCPQCGALVPVDRVGEVRACSKCQHALSRTEQLGQLLARWYEPRRWRADLVKPSVPYLIERLWTANGQGERLYLGVSPKYTNYDIFRNLVTRLMIRGIDDGWATLQFPPDPLAEDPQYVLTITDSEKFAEGVEKLFPEVDWDEPVSAAVVEAVGATAPAPVRPAKAGGKSSKKKAKKR

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