| Basic Information | |
|---|---|
| Taxon OID | 3300021379 Open in IMG/M |
| Scaffold ID | Ga0213864_10002583 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7979 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (96.55%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026855 | Metagenome / Metatranscriptome | 196 | Y |
| F028484 | Metagenome / Metatranscriptome | 191 | Y |
| F037687 | Metagenome / Metatranscriptome | 167 | Y |
| F041146 | Metagenome / Metatranscriptome | 160 | Y |
| F042289 | Metagenome / Metatranscriptome | 158 | N |
| F074770 | Metagenome | 119 | Y |
| F105002 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213864_1000258312 | F105002 | GGAG | MEYFNKWYAVMQWDAFDKQYVELVKRPQKHLCYEYINDRKLRNAKVVAYYW |
| Ga0213864_1000258313 | F074770 | AGGA | VNADPTGFEDAWADIYWTFAHDDMAFDYRDRYFKERFLRVKAGLVDFEKLTIVK |
| Ga0213864_1000258317 | F041146 | GGA | MPEKIHLYQIDGGYTYWEAYSDYTNNYLFSLDNDDVGDYIAQNKDKDIRVYPQEPYNAMYHFHLEMDKWWGSKDYHVDDCDSLHVPRIPLDYMCEGCRIFEDWTKNKTYGDYDKIGAKK |
| Ga0213864_1000258321 | F037687 | AGG | MMIFTYDKVKNDIWEVIKDRTDFVYEPSNECDVCTDHNDWEYDPEGYGEEPPTCNAHYDGDACRYFYADNRGFSNCDTPACVVGNWFVHAKLSPEDLNVSGWDELEGQGVRTILERAHWDIDEDTFSFLNLMQTYQDTGISWGNAYEMAVAKTEGNDE |
| Ga0213864_1000258322 | F028484 | GGAGG | MSRQDGQPQIRKLGNDYYINIYDVIEILNAFSDFSLDEFMAKAEKDLDEFECGWFEGDQARLEHLLNLFSMLVAEKRLEKIDNIEKLFQEFPSEKFIRNRSVNS |
| Ga0213864_1000258329 | F026855 | AGGA | MAMYEVEVEGRYTAVIEVEADSPDEAESEAIRTFEQDYDVVANQGAESWDYTGICGVEEQEDEE |
| Ga0213864_100025834 | F042289 | AGGTGG | MIDGIFRIEEVRADECPDEFLTRVGNANVTVWRNRLADYDGKLCFSFPYISWCGDMYVNADEPMAILVEETWEEAALEIEFDLMKKGLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |