| Basic Information | |
|---|---|
| Taxon OID | 3300021379 Open in IMG/M |
| Scaffold ID | Ga0213864_10001049 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12580 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (45.83%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001668 | Metagenome / Metatranscriptome | 654 | Y |
| F014253 | Metagenome / Metatranscriptome | 264 | N |
| F015079 | Metagenome | 257 | Y |
| F063638 | Metagenome / Metatranscriptome | 129 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213864_1000104913 | F063638 | AGG | MIDTIDTIAAVVDTVTVVTPVIDPVIVDPMTPWYVEHYVELIFIALAAIKAVLNLVPSEKPRTVFGYIDTFIGLIFKDRQK |
| Ga0213864_1000104922 | F015079 | N/A | MVQAQIDSIQGKGDWQGKYGTMYTFEVSFNDGTVGEANSKTAEPPYKVGDEVWYEVKGETQYGKKLKISKSGPDAQFRGAPSNPNKDKQIIRGMCFKVAGMAWANQYAHKQFETPHEVMVKDVITLAKKYEEAFMEWLNE |
| Ga0213864_100010494 | F014253 | N/A | MILVFKNNPEAIENTVYITPKEKRGAANVSEYGATIQALGMELKSLTTDKTVMVNAKTLTVTDRFTTFVFDATSTAGDTNADLSGAQWPEGFIQYRIVERASASDVRAITSADVILETGLGYLTRGGQTGILLTESGNYLAQESGDLILAENATTTTEAYQETTFAEYPDDAETFTYYE |
| Ga0213864_100010499 | F001668 | N/A | MATVYLPVEATIPGMTSGERATAINAEVWALLRPSALQLPQDTKYKYPQITHPETGQVAIVGDTTEQIYIHPDVDLTELLLLLPEVPQAEKDGLVMFIDMNRGGTVPFGQLIPSTSTQLTQVEAEAEGWFPDDPI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |