NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10019304

Scaffold Ga0213869_10019304


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10019304 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3879
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014804Metagenome260Y
F016596Metagenome / Metatranscriptome246Y
F021649Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100193041F021649N/AVYYDGVFYDLMTKVEYDFGINEIFPTDCVHSFLGYAKNADGTDVDPDETVLVE
Ga0213869_1001930410F016596N/AMTNQYSLDKIRKSRNEFEALLRIYGVSNTLLSKVMVVNYATSRKFLEDPTRVRFIHAKRLADYLGLQMQDIVDTIVYDLK
Ga0213869_100193048F014804GAGMNEEWLDNILDGEPSGITDTQWLIIENNICNTSLPSRTIEDILERLNHLTQLEAEEIIITINENTHERDTRKQWERMFKEGMFEHRDL
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