NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10006521

Scaffold Ga0213869_10006521


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10006521 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7333
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014905Metagenome259Y
F017486Metagenome / Metatranscriptome240N
F049548Metagenome146Y
F058952Metagenome134N
F060810Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100065211F014905AGGMKPVPFHKLSPKMKNIRMNQWIKTYIGRGLSLEDAQHAARWRAGHWKLNARMEKIMDDLGEL
Ga0213869_1000652112F058952GGAGMTNETKPSAEQVKFWEGVKQIILDRADVIAELDRDELEALQDLRWASMSLSEDVCYIMDFCYSEVIEFCRAADFLCEEYSWNTSENEDKRDIGKKSLALAEALRGDAGDGPRLSYGQAKDFGGIYPRITGLLHTKPNKYQMERFAEHGITWEGEVDEH
Ga0213869_1000652113F060810GGAGGMSIKIGLPDVTFNALCRITEIDREFIGSPDYMGVAQFWDWSHPQNTRLSRASVSARRKIHAALVRDGLDLNGDTGIHRSIISIVLEKEEQGL
Ga0213869_1000652114F049548AGGAGMNEREEQISQATQDFLMALPDKMKNGHLGSVICTMFEAFGLGHETRVDICEGVLNVMLEHDMRDDERAAQAADDVIARAAAKARK
Ga0213869_1000652116F017486AGGAMNKIIITNAHAHGFAFACDTETQGQVFIPVHIADGFDLAPGDEIEAVLVPNYQDKSDKGTPWQAVKLQRDNEVCEKAIIDNSQTLNNEALDAEIMRYILAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQKRPTIILWAAAAKTFIEVV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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