NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10001211

Scaffold Ga0213869_10001211


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10001211 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19575
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046650Metagenome / Metatranscriptome151Y
F050684Metagenome / Metatranscriptome145N
F065138Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000121113F046650GGAMGTSRPVEVLTGSTDFYTVYTLIDITDTGVVSPKGNSKGFFQAQNLNTFIQSISLRSQPVLSSVEKLDAEDVADHQFGSNFTGLHDVWVLKFASETADAWVKESNDTYMLEEDFNTMPIHVTLDETALINPEIVDTMTVNKNTYFKYSKNI
Ga0213869_1000121131F050684GGAGMKKTPWPSITVVDVMCAAVLVYKDQGFVRSGQGYTDTDTQTGNPIEIQDNKTCIVDILEDPKMSFSEEEITYANNLMDTINGKLMIKKMTNNLNNFEQNVAKALADPEVNKFAVSIIASLPHSVVIDKKREAVEDKMSALKHSSMYFGNRGKRYDINVKVLDVKFIQTSDVYMITTIYAEKDIIKFWWRDQPDISDIISDKTIKIRGTVNKHELSKYSNAKETLVNRVKILQI
Ga0213869_100012116F065138AGAAGMRYTDLFEISVVDSKVIDLLSILSSEGVESIPLDALVGELTAMGVDVDDQSLFDELDNIPIVNNIKDGIVYFNTASMGASNLNKVDPEKNKKKVKAMAKKQVDKELSK
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Institute for Fundamental Biomedical Research
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