Basic Information | |
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Taxon OID | 3300021375 Open in IMG/M |
Scaffold ID | Ga0213869_10000029 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 118931 |
Total Scaffold Genes | 125 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (16.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002698 | Metagenome / Metatranscriptome | 536 | Y |
F047320 | Metagenome / Metatranscriptome | 150 | Y |
F051049 | Metagenome / Metatranscriptome | 144 | Y |
F071304 | Metagenome / Metatranscriptome | 122 | Y |
F092876 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213869_1000002912 | F092876 | N/A | MENKIKTPITELIEQFESELHHDNVNSGLRYAIAISKRMLKKEQKIMCWFAREWHAIKKE |
Ga0213869_1000002918 | F047320 | GGAG | MKEEDFIHRHIESILDVPGDLSSGINGCILASVFDRACDILESNGSKKPNIVDVIDDPECELTYLVENG |
Ga0213869_1000002958 | F002698 | N/A | MKLKLDRIDQHALTAFINRVKPIDSFIYMKIADGTINSTVYLPQRDAVKHHSVEASTIFQVEAWPETDKEMKIAFFEGNKVIEAIKHFDADAIKGEIEFIENDNELVAASLRIFNDELEITLACSEPSLGFKDLTQEQIDVIFAKEDSKFDFSFDTHMIGKVKNLFSLDKDETFSIKSDVSGVSVSGKSFSVVINPDTSGNGEVTVYKKYLSLLDKDEQTVYVSGSKVVFNSNDTNTLLTVSTCQTA |
Ga0213869_1000002975 | F071304 | GAG | MKKIKAKLLTYLFTDWVKSETDVETLIMTRNMIEQRKNKITGHTPVLGFRMHGTTNIK |
Ga0213869_100000298 | F051049 | N/A | MTVEQRLSNLEVSYIKWSEKENGFEDAGYIWWEREKDCQEWCNKEKTYVPMSTTKTLVTMRAWVKRQKSFCS |
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