NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10020581

Scaffold Ga0213865_10020581


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10020581 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3734
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y
F024348Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100205816F013231N/AMTNQKNYQTCKLIKNRIDLYLFEMARLFTYIGTDSTVEEIQEAYKREKEYIELIAELDPEKADRLRSSY
Ga0213865_100205817F024348N/AMINEYYEDLTADEADFILDLYEVINRLVYNGYPVTLVRLAFELGVSTEELSDHLSVILIILNKVEQEYAEVRQGFD
Ga0213865_100205818F008384GAGMPRYDKALIEKEAILSAQQGKITEELGKFILQRSIEIASSAFVTDGNKELQQSLIDVAVMRTCEKFLHYYEQGKSAANLVISIIYSTMTNKIVSLNHSDVYGHRIKGYLTYIEDGQSVTKLKRYVKDDYLSEKL
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