NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10019667

Scaffold Ga0213865_10019667


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10019667 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3822
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005491Metagenome / Metatranscriptome399Y
F011658Metagenome / Metatranscriptome288Y
F021776Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100196674F005491N/AMSAFYKDTRFDGKLVRLEDVIEEVTERAIQVIDDSLYELLDDSDSDEFYMDYKEALDFIVKNLQEFNNVTK
Ga0213865_100196675F021776N/AMTKDELEIKISTLQNLVLQKNEELNDYAAQIERLNDELKDLNKPKLTPMQLDELYQAIEQGIESFDFDDADNFDVDFHIDYDNRIAIESMSFLNADELLRVVYDEAREIFAEAKLPEDDNQLNQD
Ga0213865_100196676F011658N/AMKTLWQQLKPEIKETLNDQEEKYPSMVKAIKIALKDNYIWSHLSIGEVRDIVYFTDYTYASLSSYDWSYGEKFITCED
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