NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10012700

Scaffold Ga0213865_10012700


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10012700 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4820
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009067Metagenome323N
F018932Metagenome / Metatranscriptome232Y
F050306Metagenome145N
F077316Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1001270011F009067N/AMKDKSKQVWYLYAHNIKELKRQCYDVISTLYVQLGQAPEAEIIVQMTNLFCNDLATNYGSMELDEVRFALNQHIRENDGPHFVNVPMWNEALRSYKMSKALKRQTNQIDQYELYKKRVESFSKAIDKREIKKIGNANDNK
Ga0213865_1001270012F050306AGAAGMINYLDIKERKDVTVKKMFEIYKSDSKYRNRITWDTHYLITGWKHIQQTKDERQK
Ga0213865_100127007F018932N/ALKSNRATRHQEIYKRTKNGLELVLPKKITTDIGFQLMFGHREDYRVEEKRIERNADRYFTKTYLDVEDFKKYI
Ga0213865_100127009F077316GAGMRKQSKGINKKLESWINNRLFKTLDPKDWEIESILYIYNNEENSNIRGRSEQSKHSSRRN
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