NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10002886

Scaffold Ga0213865_10002886


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10002886 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10712
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005132Metagenome / Metatranscriptome411Y
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y
F092935Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000288613F008384N/ALKRNTRYNKEVIEREAVLSKQQDRITEPLGAFIYQRALEISGSAFITNGDRELKQSLVDESVMRVCEKFLHYYKEGGSAANLIITMIYSTMTNKIVGLKWKDVYGQKIKGRVVCIEDGEKFTRLVKYVKDDNISSKL
Ga0213865_1000288615F013231N/AMLEQNSTDVKNYYNCKLTRNRIDSYLYEMAKIFCNVGTDSTLEEIQEAYKKESEWIDKIAELDAEKANNLRASY
Ga0213865_1000288619F092935GAGMETKNSPTHSLILERKKAFANLVRAYLRFNVSDALNIVVEEDGNISINGNYYKFDVSDYTGCTEKYIFLNPSSGRILIQNNNVKKIYKLEVDLLDN
Ga0213865_100028868F005132N/AMVDIIFIDDNYIYKNFPLPKRLDRGALLSIIQLEQYTSIQDLLGSCLYEKIEKNVKDKTLSTTEEKLFKLVKYSLAMYSANSVISMLRTESARTRNEEQNQDQQSLDAISSAIESKLSYINKRIVNFILDNPILKAVATAEGCDNDLFEDEDVYQGSVFYPSGRISDSDCE
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