Basic Information | |
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Taxon OID | 3300021373 Open in IMG/M |
Scaffold ID | Ga0213865_10002886 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10712 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (19.05%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005132 | Metagenome / Metatranscriptome | 411 | Y |
F008384 | Metagenome | 334 | Y |
F013231 | Metagenome / Metatranscriptome | 273 | Y |
F092935 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213865_1000288613 | F008384 | N/A | LKRNTRYNKEVIEREAVLSKQQDRITEPLGAFIYQRALEISGSAFITNGDRELKQSLVDESVMRVCEKFLHYYKEGGSAANLIITMIYSTMTNKIVGLKWKDVYGQKIKGRVVCIEDGEKFTRLVKYVKDDNISSKL |
Ga0213865_1000288615 | F013231 | N/A | MLEQNSTDVKNYYNCKLTRNRIDSYLYEMAKIFCNVGTDSTLEEIQEAYKKESEWIDKIAELDAEKANNLRASY |
Ga0213865_1000288619 | F092935 | GAG | METKNSPTHSLILERKKAFANLVRAYLRFNVSDALNIVVEEDGNISINGNYYKFDVSDYTGCTEKYIFLNPSSGRILIQNNNVKKIYKLEVDLLDN |
Ga0213865_100028868 | F005132 | N/A | MVDIIFIDDNYIYKNFPLPKRLDRGALLSIIQLEQYTSIQDLLGSCLYEKIEKNVKDKTLSTTEEKLFKLVKYSLAMYSANSVISMLRTESARTRNEEQNQDQQSLDAISSAIESKLSYINKRIVNFILDNPILKAVATAEGCDNDLFEDEDVYQGSVFYPSGRISDSDCE |
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