NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10039256

Scaffold Ga0213863_10039256


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10039256 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2540
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011354Metagenome / Metatranscriptome292Y
F020000Metagenome / Metatranscriptome226Y
F070056Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_100392561F020000N/AMPAVATTAVDRFTNVVEHTGATMSAVGDSFEITGHTTEYSFAAAVTSEANFTLALEANFNGNGSWFTIDTSKTINSSGQYVYFYTGKPASKIRMRIASISSGTVSLTPHIVAAYHG
Ga0213863_100392562F011354N/AMGTRIISGFCTHLEVDSESRTTEASFAFMTPQDPEDFAGLMVRLASGIEVMIEVEDEE
Ga0213863_100392565F070056GGAGMGKSLEKVTKPDGSQVWELVELREQQPEPAPEVCKAVRKRKPSKPAEETPTTPFDF
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