NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10018817

Scaffold Ga0213863_10018817


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10018817 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4024
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018270Metagenome236Y
F042027Metagenome159N
F075343Metagenome119N
F089424Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1001881711F042027AGGAGMFDTWDQALHMRDKLHEVSRLADSIGLLASDIVDDFDNHKRCAINEEQLRETLKELNNTLEGLNL
Ga0213863_1001881713F018270GGAGGMRPDYTIQSDWSKWEDHAKTCDVRALRHIIADCRNAAAAMRSHNTDKEGYYIDQACTYSDELRNRLT
Ga0213863_100188173F089424AGGAGMFALIATKPLNDNTYGCRFNLLGIKGLTRRRKFKSRGIKFKALNSMIALHFFKRTIYLEKKANRTTSRRVRHFAG
Ga0213863_100188179F075343GGAGMNKTQRLHREIMGELMQHLSKNDAEYFANWLLTHYKISEYKDVQPLNVGQSDTKS
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