NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10002551

Scaffold Ga0213863_10002551


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10002551 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12885
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019027Metagenome232Y
F028553Metagenome191N
F029154Metagenome / Metatranscriptome189N
F080516Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000255110F080516AGGMSLERIEELGQILSKLDLTIQHMLSCKITPDDFPDLNDALTMLEEARGMLRKAYQNVRTDYDQTGN
Ga0213863_1000255118F028553AGGAMDERKGAFVNLDLKDKFDFNLPVSGNLSIDGTSNEPRSELDLYKTFDGRMGSVTPSMGYTTEETKYRDGMAGVENKARTVRLGLDGSTRLGPVDLSGNVMGSRTMQDKTYTFPFATFTQGSSSTFSKLGAAAKMGAFDFEINRQKTSGMEPVYSGSIGINIGDGGRISYSDSNMGEPRIDARYRMEF
Ga0213863_100025514F019027GGAGGMSGATAADFAKWEDHAKSVDQDALVFIIQDCRNAREAMKGWNPEKENFYADQGMTYSDELRRRIK
Ga0213863_100025519F029154N/AMELQKIHGLITNITQHYSAFAVDAEGQNTFITNNLARFLQLTVGDQVLMDVVPNHPDKAQTIPYRAVGCVKLKESLPEESPEQPEHGVLTEIIERQKQTPQQIAEDLKAVLKAADTYLITSEVIAAYREDNPDHATTTDKDINNNLARLHSKGKIAKAEVWGSPEQSKCSFNLWAHNVSRFTL
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