NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10001907

Scaffold Ga0213863_10001907


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10001907 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15016
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010393Metagenome / Metatranscriptome304N
F017728Metagenome / Metatranscriptome239Y
F018620Metagenome / Metatranscriptome234Y
F028945Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000190710F028945N/AMKVRFLKSVSGNGFHYRKQAVVEIHSDEMLTDFLNAGFCEAIAEAPKARAKKAVKKTNTKETR
Ga0213863_1000190713F010393GGCGGMMSARSKRTGGGSGGAFIGFDEKDIKKEFERAFKELENLHDGVTTAQIRRIARKSLKPMLKGYKDEITNISSGTFKVYRNGGIYAEITKGQLKKSMGIITTRVNRGATFASLQVGPRVKRTFSDPEKGGWFAHFLEYGYLRDGQYSGPNKGFAKRARTKNSGGVGNEFKRLMRSFLNKQVKAARI
Ga0213863_100019074F018620AGGAMMKIEDAQSLAMQLFDCGMTPWIAESGDGYIVRILLNGEIINVMRSDVEHFGNN
Ga0213863_100019076F017728N/AMYYTTTTKDSVHYGLNMEPVDDISVGDIIEMTRTGKEFLVESITPSGIVLKECTTYVSFSRSALNERLKRNSAIHKSI
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Institute for Fundamental Biomedical Research
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