NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10000573

Scaffold Ga0213863_10000573


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10000573 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27943
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031840Metagenome / Metatranscriptome181N
F041775Metagenome / Metatranscriptome159Y
F086721Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000057317F086721N/AMKIIDIVFFTTNDNQVSAHLYYSTEDSACESVSSVGVSRKQAIFNLCKQGKLSWDLFAEAKSLALTKKDPRFQKKTFVSRNSVRDQKLADICDDMRCSVREAVAFLDHGLAPCGW
Ga0213863_100005734F041775N/AMRLNDPHHLQVQDLDALEANELAMAFIHDKLIEPMEQNNLLDEDAFSLLNVVGGALKAIANKAHSYETLYENKTNASFYRN
Ga0213863_100005736F031840N/AMNQSTSTMKTFDDLTFTPHANLQDLGVQASLTLDNGYAFSVVGNTEGGDFFKGNHPDNYEVAIFNPKGNFVPLSVSDDVLAYQAPHQITSLMHQFELDGVLHEKLLADIRHDFNEKVAERYEEETEIKY
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