| Basic Information | |
|---|---|
| Taxon OID | 3300021368 Open in IMG/M |
| Scaffold ID | Ga0213860_10205008 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 868 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002188 | Metagenome / Metatranscriptome | 585 | Y |
| F003777 | Metagenome / Metatranscriptome | 469 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213860_102050081 | F003777 | AGGAG | MSKKKPNIITPFDDRERFKNLVQEVINDTTIFSHIPDSISLSGNLFTLTLSNKKFNFDELKVDSNLDYTDVYLQGIKKDADTYSVTDNGTDIVINFTESITLEPSEIVR |
| Ga0213860_102050082 | F002188 | N/A | MGIKDLKKILEQVHEPDEYQLTADNLSDPNYYIWKLENAKMKDLNLNLRNYRPEHARFDIFINGQYILEKDYILEHDGKNFIVKFIRANFPYTIRGFDDIKIEGDIDLVXVRKNLT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |