NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10024171

Scaffold Ga0213859_10024171


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10024171 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2841
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024562Metagenome / Metatranscriptome205N
F049004Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0213859_100241717F024562N/AMAIIYEKNFTDPNEKVVRQFTNCCGASDKGTEFGIVCRGCYAPIEGYMADGDDAPEEFENYITNEVILEKFKEFVNQEWNTYMEWHDYMIEKIMNKEN
Ga0213859_100241718F049004AGGAGMARRYFVNVTMEIFTPDQGVGEKAEKNENRDARWFADTIAEKTQEHIKDEFQHSERNYHLNEVQVNYLERS

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