NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10000519

Scaffold Ga0213859_10000519


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10000519 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17660
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F040126Metagenome / Metatranscriptome162N
F049672Metagenome / Metatranscriptome146Y
F059863Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0213859_1000051924F059863N/AMTNFKTGDKVKWIEPMTIVPHPEGKTDRKGEVLPVFRDKEMTGTIITSTAYGWSVRPEWAEKYKDAMCGERYYDKTIEESKLTLI
Ga0213859_100005195F008425N/AMSAKKNKDITYDQFLTHLNKGKKGYMKKPRSWQKIWFWWEDKDCWFLNKAYDKRKDGKVEPEESVWITAKDMHHHCGHLERQGYKYFKDE
Ga0213859_100005197F040126N/AMAKVPLFEDFVPVGFAPNYAAQFALGGGYKDTGYSMDAIVGPVETLGNHVAEQANSYETNDNPDHTSEAYIKEAKKHINDKIDEACENYSAMSESTINEGTDIGSWNQAGVKGDANALVTTFVGPRDVESFGLGRKCMQINVGRNYVQLNPADIVELKDLLKNYKV
Ga0213859_100005198F049672N/AMIPKFSNYLNEASDYEFDPNAAAARLKKREQENIQRYRAAQDRGDNYAIALYELKIKMDKIDLEGLKVQTEIHKLKQKFGK
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