NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10014614

Scaffold Ga0213858_10014614


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10014614 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3717
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F008883Metagenome / Metatranscriptome326Y
F056586Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0213858_1001461410F002858AGGAGVNEKSVYLIDGGDYSIYCLGYTQARVITNEIMRRDPWGGIPFVLSQDFDLSFDDKGNVVMTKNTLEKILKLASDDLPKATEDGEQ
Ga0213858_100146142F008883GAGGMNFGRYTIWYNHEDHVWDIYDGRKGFRYPEYTINNYSRLLCGLRDKLGWLDTDRNHRRFWSVMRFIRRATK
Ga0213858_100146143F056586GGAGGVNMKQTYQVIMTKVYEVKVEAESRDEAVEIFDRFADWEELLKVHTLDVETCPEDVLVLRAEG
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