NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10010706

Scaffold Ga0213858_10010706


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10010706 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4332
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F005495Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0213858_100107062F002716GAGGMSQFRLETELDMAGYLDINFGHGVSAVYTNSGGTAATINVILNNEYVEQEEGIGVEALKPIAYCRTVDIPNIAFGNRLDVSAIKDVNGNVLKAAQSYTVVNIQSDRTGFSALMLEEI
Ga0213858_100107063F001582AGAAGMPLESAADFNSYVDINTGHGVTATFFEVQNSLWDQRLGLIDTWYDIDSGNSTNINIIIDQEYFNIEGGTVPVAGYQPRAIVKSSDVPYISQEDRLVVDAITTDQGNVLKAETTFFVKTVEPDNTGLVSLVLEEQ
Ga0213858_100107064F005495N/AMLKWNGGSNTPNLKMKKYKILQDTMANGQKVHAGDIVELPEHEGHTLCAYNKAEETTVKPKAKKVDRSVGLETSEVKAPKKRAKK
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