| Basic Information | |
|---|---|
| Taxon OID | 3300021354 Open in IMG/M |
| Scaffold ID | Ga0194047_10000190 Open in IMG/M |
| Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 41949 |
| Total Scaffold Genes | 76 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 66 (86.84%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 49.701 | Long. (o) | -93.727 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F003521 | Metagenome / Metatranscriptome | 481 | Y |
| F004695 | Metagenome | 427 | Y |
| F006264 | Metagenome / Metatranscriptome | 377 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194047_1000019010 | F006264 | N/A | MSEYKDRFKEFLPTQAEVCARKTLEWLQKDLQGDQKLNPEEIYHLSTAAKLLLNIRDMYGKE |
| Ga0194047_1000019011 | F001059 | GAGG | MAYDIGALRADLPTAKDLAQFVYDKTGIALDLIGKAKDEQYAVAKAALENKDIPKGFMTDENPYVDKKELIPVDDIKPPPGKEKDVPPEENRIHFFGATNMPHPFDPQSDKKVTIDFRKYDNGLITYQITGPLEQQAVGSRINKFGQSQPEKYTWIDPRTAECVLRRADGTFTQKGRGLHTYCISEKGSGIWPLIDKDIVSIDAKNITDPWA |
| Ga0194047_100001903 | F000857 | AGGA | MKLNLENEEAVVNEDYYTQGNMAGGIEGLLIKNNKMFNEVKSGTWSQTFKTDNLDYKIGAQDGVRYVQYDQKNVEAIRLACKETREFYQKHGTANPFFAGTFHAMNLPKCFAHEISSKWFNNRPWELIKMDKADKLKFYAIVNEHYSDFVCHPSGKIPLPKNVLIPTV |
| Ga0194047_100001907 | F003521 | GGAG | MKSLVLHINEFFNRRTKAIDAHKSASLEKRTLVIENGESAKKLLANKDFALMFNLYRFQMLERLEEVKTDLERIENATYVAGVRDFIDFIEKQEYLAKLVLKNLTKED |
| Ga0194047_100001908 | F004695 | GAG | MLDKQNVIVQGITSPDGKDSVIAKVAHEAYVKMVDYLRLTQAKNAINRMSDYHYLNIPVSNSTEPIRGIDYIHPVVTPGVDYATAVVTKCLMPSGKINFEFERFAETDVTASNQATEMVKYMLNSKNDSYQFVRDWAQDALLHKNGIVMVSPVRDKITQYKEVEGTRDQLRSFEIMAADKGLTAKRQQMRKIDVDLQGAMGMPSTPTDYEDPQWEPNPLDNPLPEQQAPQGMPTLPSGADLVDALNANTIYRARYKLTGFSTSIRIKQVAQHYWICNPTIPRIQDQDFCGFYDPMTIHEAKAQFPSIDLELFAEHAAYGPAGAYQAGALENDLAIHARDSTPVPGQGAVASRGADKYSNVVMISTVWNRKDIDNDGEEEIVEICYSGSYVIYAKEVDFIPLGNMCPKPLTGNFFGYSMAERLVPMQEYSTAINRAEISFAMQASTPRIGVNPEFVDAEEMQRGVSALFILDRKFDQNKHVYEFQPMQGNLSYVESAMQRFESDRMNIVGMTSPNDTMNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCALGLKEVIYLTWKTMIQYKDDYNIKQLAHAVANGQPFLDADSMDRYEFIDRQLINVDLALGFLSDENRLTRQQMISQAQMQFTQAMMQIDPSVPEMFSKLRRPFEDTLRVLGVKDVDAYLPTMAEGAKMAQSAAQKPPTPEALETKSKTDLNNANVKKSEAQAALDLKKAQDIDTDNAFVAQAAKRGKLTAVEMD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |