NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10000049

Scaffold Ga0194047_10000049


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10000049 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89898
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (11.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010082Metagenome308Y
F026169Metagenome199Y
F034973Metagenome / Metatranscriptome173Y
F070891Metagenome / Metatranscriptome122N
F078631Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0194047_10000049100F026169N/AMATIKKGSVSAGTKAPAKRVGPVDPTGAYTKVQKRTLAGAKGKAKLVKDKELGATKMKSGGKMKKCKSGCY
Ga0194047_1000004919F010082N/AMLSPRLTDCYDSASIPALLSDIDERLTYWANIQYNNLVFSLNYYIPGQVIGDLLNYKQILTYKLCNPFYCEPYTVQMIASKVKLLIYK
Ga0194047_1000004946F070891N/AMTELNNTLKTKEMKELFKILFEDKHPEDQPLKLEIKLKSTATPDEELDQNEWYQYINQLIESNAKRS
Ga0194047_1000004950F078631GGAMNFVELHIWMMMDTQSTNMILQLNPMIPIIRKSDGMKGYAFLVIDYSQEHYLLFTCAMQNGDIWSLDNREISLQNNPSLDRKTNTHE
Ga0194047_1000004998F034973AGGMKSGKPQKAPKVAPPKPINGNYMKEADTKLRLKSKMWPLKQKRLSK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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