NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206692_1215130

Scaffold Ga0206692_1215130


Overview

Basic Information
Taxon OID3300021350 Open in IMG/M
Scaffold IDGa0206692_1215130 Open in IMG/M
Source Dataset NameMetatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)556
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022080Metagenome / Metatranscriptome216Y
F031507Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0206692_12151301F022080N/AVKMNESKTELYGVQYMLSKWERNLGDTLNIDGTKWLVGMIGDTKNDVISALNMIIKKQNSIINKKKYQQKKEEKFIMNNILNNVMKELNL
Ga0206692_12151302F031507N/AMIKVNDKIKFENKYGQIQEGIVTYNNYQCEFDADLNGCIRVSVDYGSSIIGSVNTLIDKSQVI

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