NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10000038

Scaffold Ga0213862_10000038


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10000038 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46960
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (14.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022610Metagenome / Metatranscriptome213Y
F030698Metagenome184N
F079817Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_1000003863F030698N/AMKKYIVRFFGWEEEMQGFNLSQEQVDKLEEAVSNGKYESIDSMGMDIEELIGVDFFEGDVFSMSRANYLPDNTYIFVYDEDENELFSFDLNEMSDIENHKEDFDYEGVTQLEFIPEKGGVENVLFVSASNKGGLYEFHIESEDVPKPEDFSIVTGIIEMLDVYYEFIEYVYFKGEKLEIEEWLDNRGKGIDLRLTKLQDLYDFWEENGIKNPYTELT
Ga0213862_1000003874F022610N/AMKIKLTETQLNTVIKNLISEQGLYGDTSDVVDYDLPEFLSDTIILQKINDWSDVEKSLKELHKRLIRLEKGLDSAGSHNKAYGTGTNYSARNKKDVGFEKASDSIERDEILRSDLEQLRKDLEL
Ga0213862_1000003878F079817GAGMTVHEISNYFNQCPNMEKAYKEHKNIGRLIRSNVFKYTSTRHWDNMDLLYKITYIKVSRNDDLLVNIKVSGTMGRSCWRSKENTCVTDYVKINHSTSRRRNDDIRRAVRNDVQKFFRLFGMDSYKVEIGKVKVCKEL
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